PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 283aa    MW: 30444.9 Da    PI: 9.7508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-10250274126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +fa+ G C++G+ C FaHg
  XP_011080230.1 250 YKTKLCENFAK-GPCNFGNHCLFAHG 274
                     9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.7143765IPR000571Zinc finger, CCCH-type
SMARTSM003568.73764IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-44262IPR000571Zinc finger, CCCH-type
SMARTSM003560.4999126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.68199127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7100129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8100129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.72E-15150229IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.8E-15157227IPR004088K Homology domain, type 1
SMARTSM003221.2E-10158228IPR004087K Homology domain
PROSITE profilePS5008413.271159223IPR004088K Homology domain, type 1
PfamPF000131.0E-9161224IPR004088K Homology domain, type 1
CDDcd001055.08E-13161224No hitNo description
SuperFamilySSF902291.57E-8248280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878249276IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-13249281IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7250274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MELGGSKKRG EDEGDGTGDG GSKRFKQEKE SITTGIRRTV LPCSWFFSPS GCSLGNRCQF  60
LHYVPGGIKA VTQMLGRNPA LPAAPSHPAV PPSFRLASAI QPQFCYRFNT AGGCMYGKRC  120
YFLHSKHELG RSTMPFHGNL HAMEPIPPNR GAAASFEASA TVKISIDASM AGAVIGVGGD  180
MSKKICRLTG VKLSIKDHES DPKLRNVELK GTFDQIGQAS QMIHQLIIHV SASSGSGIKT  240
PASSASRKYY KTKLCENFAK GPCNFGNHCL FAHGAEELRK PEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080230.10.0PREDICTED: zinc finger CCCH domain-containing protein 31-like
TrEMBLA0A068VA911e-98A0A068VA91_COFCA; Uncharacterized protein
STRINGVIT_06s0004g01290.t011e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-50C3H family protein